Superbest Superbest - 3 months ago 41
R Question

ggplot plots in scripts do not display in Rstudio

I have a strange issue with Rstudio: If a script calls ggplot2 functions to display a plot, then using Source to run the script does not produce the plots. If I select the whole script with

, then Run the current line or selection (
), then the plot does display. Likewise, typing plotting commands into the console produces correct output.

For example:


p = ggplot(mtcars, aes(wt, mpg))
p + geom_point()

Will only produce output if pasted into console, not if sourced.

There are other questions about this, but neither is helpful:

How can I get Rstudio to display plots when a script is sourced? I am using Rstudio 0.98.1062 and R 3.1.1.


The solution is to explicitly call print() on ggplot object:


p <- ggplot(mtcars, aes(wt, mpg))
p <- p + geom_point()

ggplot function returns object of class ggplot; ggplot2 works by overloading print function to behave differently on objects of class ggplot - instead of printing them to STDOUT, it creates chart.

Everything is working well in interactive mode, because R assumes that most of commands are run through print() function. This is for our convenience and allows us to type rnorm(1) and get any visible output. When Run current selection command is used (Ctrl+Enter), RStudio behaves as if each selected line was typed in interactive mode and run. You can verify that by checking your command history in Console pane after running few selected lines.

But this convenient mode is abandoned when file is read by source(). Since this function is intended to run (potentially long and computationally-expensive) R scripts, it is undesirable to pollute STDOUT with low-priority messages. That's why source() by default will output only error message. If you want anything else, you have to explicitly ask for that.