geotheory - 10 months ago 115

R Question

I cannot seem to replicate the adding of a linear abline to a log-log ggplot. Code below illustrates. Grateful for an idea where I'm going wrong.

`d = data.frame(x = 100*sort(rlnorm(100)), y = 100*sort(rlnorm(100)))`

(fit = lm(d$y ~ d$x))

# linear plot to check fit

ggplot(d, aes(x, y)) + geom_point() + geom_abline(intercept = coef(fit)[1], slope = coef(fit)[2], col='red')

# log-log base plot to replicate in ggplot (don't worry if fit line looks a bit off)

plot(d$x, d$y, log='xy')

abline(fit, col='red', untf=TRUE)

# log-log ggplot

ggplot(d, aes(x, y)) + geom_point() +

geom_abline(intercept = coef(fit)[1], slope = coef(fit)[2], col='red') +

scale_y_log10() + scale_x_log10()

Answer Source

As you are plotting linear relationship between x and y, you can use `geom_smooth()`

with `method="lm"`

.

```
ggplot(d, aes(x, y)) + geom_point() + geom_smooth(method="lm",se=FALSE)+
scale_y_log10() + scale_x_log10()
```

It seems that `geom_abline()`

doesn't have argument `untf=TRUE`

as for function `abline()`

.

Workaround would be to use `geom_line()`

and new data frame in it that contains y values calculated using coefficients of your linear model or using function `predict()`

.

```
ggplot(d, aes(x, y)) + geom_point() +
geom_line(data=data.frame(x=d$x,y=coef(fit)[1]+coef(fit)[2]*d$x))+
scale_y_log10() + scale_x_log10()
ggplot(d, aes(x, y)) + geom_point() +
geom_line(data=data.frame(x=d$x,y=predict(fit)))+
scale_y_log10() + scale_x_log10()
```