FM Kerckhof - 1 year ago 141
R Question

# Set the height of the graphs y-axis in grid.arrange, but not of the entire plot area

When using grid arrange I encountered the following problem :

I want all my panels (a,b,c) to have the same size, but as I have removed the labels and tickmarks from panel a and b (to have only a single x-axis) the size of
the graphs a and b is bigger and equals the size of graph c + space for the lable and tick-marks of c.
I cannot make use of

`ggplot2::facet_grid`
either, since I want to specify the y-axis limits independently (eg. of a until 40 and of b and c until 15).
Below you can find the working example used to generate this plot, based upon this post to align the plots vertically, but I am clueless as how to assure the same height of each plot seperately. Any pointers are welcome.

``````library(ggplot2)
library(gridExtra)

# generate data
data <- data.frame(values=c(runif(20,0,40),runif(40,0,15)),product=c(rep("a",20),rep("b",20),rep("c",20)),treat=c("e","f","g","h","i"),time=c(0,6,24,48))

my_labeller <- function(var, value){
value <- as.character(value)
value <- c("a","b","c")
return(value)
}

#subset data
data_a <- data[1:20,]
data_b <- data[21:40,]
data_c <- data[41:60,]

# Make plots for all parameters seperatly:

p_a <- ggplot(data_a,fill = white,
aes(x=as.numeric(as.character(time)),y=as.numeric(as.character(values))))
p_a <- p_a+ geom_point(aes(colour=treat,shape=treat),size=4)
p_a <- p_a + geom_line(aes(colour=treat))
p_a <- p_a + theme(axis.ticks.x = element_line(colour = "grey"),
axis.ticks.y =element_line(colour = "grey"),
panel.background = element_rect(fill = "white"),
panel.grid.major=element_blank(),
panel.grid.minor=element_blank(),
axis.line = element_line(colour = "grey"),
axis.text.x = element_text(size = 15),
axis.text.y = element_text(size = 15),
axis.title.x = element_text(size =18),
axis.title.y = element_text(size=18,angle=0),
legend.text = element_text(size=15),
legend.title = element_blank(),
legend.position = "right"

)

p_a <- p_a + scale_colour_manual(values = c("#FFFF55","#000000","#0000AA","#00AA00","#00AAAA"), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)
p_a <- p_a + scale_shape_manual(values =c(15:18,8), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)

p_a <- p_a  + guides(color = guide_legend(nrow=5),size = 16)

# p <- p+ guides(colour="legend",size="none",shape= "legend")

p_a <- p_a + scale_x_continuous(breaks= c(0,6,24,48))
p_a <- p_a + xlab("Time (h)") + ylab(paste(data_a\$product, "(mM)"))
p_a <- p_a + ylim(0,40)
print(p_a)

p_b <- ggplot(data_b,fill = white,
aes(x=as.numeric(as.character(time)),y=as.numeric(as.character(values))))
p_b <- p_b+ geom_point(aes(colour=treat,shape=treat),size=4)
p_b <- p_b + geom_line(aes(colour=treat))
p_b <- p_b + theme(axis.ticks.x = element_line(colour = "grey"),
axis.ticks.y =element_line(colour = "grey"),
panel.background = element_rect(fill = "white"),
panel.grid.major=element_blank(),
panel.grid.minor=element_blank(),
axis.line = element_line(colour = "grey"),
axis.text.x = element_text(size = 15),
axis.text.y = element_text(size = 15),
axis.title.x = element_text(size =18),
axis.title.y = element_text(size=18,angle=0),
legend.text = element_text(size=15),
legend.title = element_blank(),
legend.position = "right"

)

p_b <- p_b + scale_colour_manual(values = c("#FFFF55","#000000","#0000AA","#00AA00","#00AAAA"), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)
p_b <- p_b + scale_shape_manual(values =c(15:18,8), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)

p_b <- p_b  + guides(color = guide_legend(nrow=5),size = 16)

# p <- p+ guides(colour="legend",size="none",shape= "legend")

p_b <- p_b + scale_x_continuous(breaks= c(0,6,24,48))
p_b <- p_b + xlab("Time (h)") + ylab(paste(data_b\$product, "(mM)"))
p_b <- p_b + ylim (0,15)
print(p_b)

p_c <- ggplot(data_c,fill = white,
aes(x=as.numeric(as.character(time)),y=as.numeric(as.character(values))))
p_c <- p_c+ geom_point(aes(colour=treat,shape=treat),size=4)
p_c <- p_c + geom_line(aes(colour=treat))
p_c <- p_c + theme(axis.ticks.x = element_line(colour = "grey"),
axis.ticks.y =element_line(colour = "grey"),
panel.background = element_rect(fill = "white"),
panel.grid.major=element_blank(),
panel.grid.minor=element_blank(),
axis.line = element_line(colour = "grey"),
axis.text.x = element_text(size = 15),
axis.text.y = element_text(size = 15),
axis.title.x = element_text(size =18),
axis.title.y = element_text(size=18,angle=0),
legend.text = element_text(size=15),
legend.title = element_blank(),
legend.position = "right"

)

p_c <- p_c + scale_colour_manual(values = c("#FFFF55","#000000","#0000AA","#00AA00","#00AAAA"), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)
p_c <- p_c + scale_shape_manual(values =c(15:18,8), breaks= c("e","f","g","h","i"),
labels = c("e","f","g","h","i")
)

p_c <- p_c  + guides(color = guide_legend(nrow=5),size = 16)

# p <- p+ guides(colour="legend",size="none",shape= "legend")

p_c <- p_c + scale_x_continuous(breaks= c(0,6,24,48))
p_c <- p_c + xlab("Time (h)") + ylab(paste(data_c\$product, "(mM)"))
p_c <- p_c + ylim (0,15)
print(p_c)

# now remove space in between a and b and b and c

p_a <- p_a + theme(plot.margin = rep(unit(0,"null"),4),
panel.margin = unit(0,"null"),
axis.ticks.length = unit(0,"null"),
axis.ticks.margin = unit(0,"null")) +
labs(x=NULL) +
scale_x_discrete(breaks=NULL) +
guides(fill=FALSE)

p_b <- p_b + theme(plot.margin = rep(unit(0,"null"),4),
panel.margin = unit(0,"null"),
axis.ticks.length = unit(0,"null"),
axis.ticks.margin = unit(0,"null")) +
labs(x=NULL) +
scale_x_discrete(breaks=NULL) +
guides(fill=FALSE)

p_c <- p_c + theme(plot.margin = rep(unit(0,"null"),4),
panel.margin = unit(0,"null"))

# arrange them (+ align)

plots <- list(p_a,p_b,p_c)
grobs <- list()
widths <- list()

for (i in 1:length(plots)){
grobs[[i]] <- ggplotGrob(plots[[i]])
widths[[i]] <- grobs[[i]]\$widths[2:5]
}

maxwidth <- do.call(grid::unit.pmax, widths)

for (i in 1:length(grobs)){
grobs[[i]]\$widths[2:5] <- as.list(maxwidth)
}

do.call("grid.arrange", c(grobs, ncol = 1))
``````

I am using R on linux. The output of my session.Info() is:

``````R version 3.1.1 (2014-07-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C         LC_TIME=C            LC_COLLATE=C         LC_MONETARY=C        LC_MESSAGES=C        LC_PAPER=C           LC_NAME=C
[9] LC_ADDRESS=C         LC_TELEPHONE=C       LC_MEASUREMENT=C     LC_IDENTIFICATION=C

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] gridExtra_0.9.1 ggvis_0.4       fastmatch_1.0-4 dplyr_0.3.0.2   shiny_0.10.2.1  xlsx_0.5.7      xlsxjars_0.6.1  rJava_0.9-6     ggplot2_1.0.0   reshape2_1.4    gdata_2.13.3

loaded via a namespace (and not attached):
[1] DBI_0.3.1        MASS_7.3-35      R6_2.0.1         RJSONIO_1.3-0    Rcpp_0.11.3      assertthat_0.1   colorspace_1.2-4 digest_0.6.4     gtable_0.1.2     gtools_3.4.1
[11] htmltools_0.2.6  httpuv_1.3.2     labeling_0.3     magrittr_1.0.1   mime_0.2         munsell_0.4.2    parallel_3.1.1   plyr_1.8.1       proto_0.3-10     scales_0.2.4
[21] stringr_0.6.2    tools_3.1.1      xtable_1.7-4
``````

Answer Source

You should use `rbind` instead of grid.arrange,

``````plots <- list(p_a, p_b, p_c)
grobs <- lapply(plots, ggplotGrob)
g <- do.call(gridExtra::rbind.gtable, grobs)

library(grid)
grid.newpage()
grid.draw(g)
``````
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