Lauren boomer - 1 year ago 144

R Question

I have two non-numeric vectors that are as follows:

aluOrientation vector contains one of the two strings: Complementary and Direct

aluFamily vector contains one of the three strings: AluS, AluY, AluJ

Both are of size 36.

I want to correlate these two. That is I want to know how strong the association is between, for example, Complementary and Alu S. I know how to do a correlation test with numerical variables. But those methods, for example, kendall, does not work for a non-numeric variable.

I tried changing my vectors into factors in R. But it doesn't seem to work. Does anyone know a function or a package in R that can correlate two non-numeric vectors?

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Answer Source

```
aluOrientation <- rep (c("Complementary", "Direct"), 18)
aluFamily <- rep(c("AluS", "AluY", "AluJ"), 12)
```

One way to do this is factor analysis:

```
df1 <- data.frame(aluOrientation, aluFamily)
library(psych)
fa(r = cor(model.matrix(~aluFamily + aluOrientation - 1, data = df1)),
rotate = "none", fm = "pa")
```

`Standardized loadings (pattern matrix) based upon correlation matrix PA1 h2 u2 com aluFamilyAluJ 1.73 3.0e+00 -1.99 1 aluFamilyAluS -0.24 5.9e-02 0.94 1 aluFamilyAluY -0.24 5.9e-02 0.94 1 aluOrientationDirect 0.00 1.0e-30 1.00 1 PA1 SS loadings 3.11 Proportion Var 0.78 Mean item complexity = 1 Test of the hypothesis that 1 factor is sufficient. The degrees of freedom for the null model are 6 and the objective function was 5.5 The degrees of freedom for the model are 2 and the objective function was NaN The root mean square of the residuals (RMSR) is 0.23 The df corrected root mean square of the residuals is 0.4 Fit based upon off diagonal values = 0.57`

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