ehi - 8 months ago 58
LaTeX Question

compareGroups table with knitr - how to adjust table head and subtext?

I just discovered the wonderful package compareGroups and I think this may help me a lot in the future. So far, it is working brilliantly in combination with Knitr/Sweave:

\documentclass{article}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% LaTeX packages needed for compareGroups

% long tables
\usepackage{longtable}

% multi row
\usepackage{multirow}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{document}

% R code
<<results = "asis">>=

library(compareGroups)

# Very short code for bivariate descriptive table
tab <- compareGroups(vs ~ . , data = mtcars)
export2latex(createTable(tab))

@

\end{document}

produces

I have only two concerns which is i) the modification of the table head (e.g. I want to print "P value" instead of "p.overall") and ii) adding a multicolumn subtext (e.g. "t-test was used to calculate P values."). If I just exported the table to LaTeX Code, it would be easy to modify head and subtext but in combination with Knitr I don't know how to deal with it. I just really would appreciate this wonderful solution over laborious functions in combination with e.g. Xtables package.

Thanks so much for your help!

Concern i) can be dealt with by manually reassigning the name of the 3rd column of matrix tab$descr prior to calling export2latex. Concern ii) might be addressed alternatively by placing the text in a caption (it seems to me more appropriate -- and further I have no idea about how to stick that into a multicol subheader). tab <- compareGroups(vs ~ . , data = mtcars) tab <- createTable(tab) colnames(tab$descr)[3] <- "P value"
export2latex(tab, caption="$t$-test was used to calculate $p$ values.",
loc.caption="bottom")

Regarding your request (below) to add, in fact, two captions (a numbered caption above the table and a non-numbered explanatory sub-text below the table), one way to achieve this is to encapsulate the longtable produced by export2latex within a (possibly centered) minipage environment, and placing the second caption as ordinary text below the table:

\documentclass{article}
\usepackage{longtable}
\usepackage{multirow}

\begin{document}

See Table~\ref{tab:complicated} for the main results of this paper.
\begin{center}
\begin{minipage}[c]{0.5\textwidth}

<<results = "asis", echo=FALSE>>=

library(compareGroups)

tab <- compareGroups(vs ~ . , data = mtcars)
tab <- createTable(tab)
colnames(tab$descr)[3] <- "P value" export2latex(tab, caption="Characteristics of the patients at baseline$^*$.", label="tab:complicated" ) @ {\footnotesize$^*$A two-sided$t$-test was used to calculate the$p\$ values.}
\end{minipage}
\end{center}

\end{document}

References:

http://tex.stackexchange.com/questions/15282/tabular-title-above-and-caption-below