npiani npiani - 4 months ago 68
Java Question

Deploying application using Hibernate JPA 2.1 to IBM WebSphere gives NullPointerException

We are trying to deploy a Java 7 Spring MVC application using Hibernate into an IBM WebSphere 8.5.5.2 server. The application runs fine on a Tomcat server, but we cannot get it running in WebSphere.

The stack trace output is the following:

[3/26/15 13:49:53:552 MDT] 00000066 AutowiredAnno I org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor <init> JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
[3/26/15 13:49:54:299 MDT] 00000066 LocalContaine I org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean createNativeEntityManagerFactory Building JPA container EntityManagerFactory for persistence unit 'default'
[3/26/15 13:49:54:339 MDT] 00000066 LogHelper Z org.hibernate.jpa.internal.util.LogHelper logPersistenceUnitInformation HHH000204: Processing PersistenceUnitInfo [
name: default
...]
[3/26/15 13:49:54:536 MDT] 00000066 Version Z org.hibernate.Version logVersion HHH000412: Hibernate Core {4.3.7.Final}
[3/26/15 13:49:54:543 MDT] 00000066 Environment Z org.hibernate.cfg.Environment <clinit> HHH000206: hibernate.properties not found
[3/26/15 13:49:54:546 MDT] 00000066 Environment Z org.hibernate.cfg.Environment buildBytecodeProvider HHH000021: Bytecode provider name : javassist
[3/26/15 13:49:54:580 MDT] 00000066 JarInputStrea Z org.hibernate.jpa.boot.archive.internal.JarInputStreamBasedArchiveDescriptor visitArchive HHH015010: Unable to find file (ignored): bundleresource://130.fwk-1163147521/
java.lang.NullPointerException: in is null
at java.util.zip.ZipInputStream.<init>(ZipInputStream.java:111)
at java.util.zip.ZipInputStream.<init>(ZipInputStream.java:90)
at java.util.jar.JarInputStream.<init>(JarInputStream.java:87)
at java.util.jar.JarInputStream.<init>(JarInputStream.java:73)
at org.hibernate.jpa.boot.archive.internal.JarInputStreamBasedArchiveDescriptor.visitArchive(JarInputStreamBasedArchiveDescriptor.java:73)
at org.hibernate.jpa.boot.scan.spi.AbstractScannerImpl.scan(AbstractScannerImpl.java:72)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.scan(EntityManagerFactoryBuilderImpl.java:725)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:221)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:188)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider$1.<init>(SpringHibernateJpaPersistenceProvider.java:49)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:49)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:343)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:318)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1627)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1564)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:956)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:747)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at com.ibm.ws.webcontainer.webapp.WebApp.notifyServletContextCreated(WebApp.java:1686)
at com.ibm.ws.webcontainer.webapp.WebAppImpl.initialize(WebAppImpl.java:414)
at com.ibm.ws.webcontainer.webapp.WebGroupImpl.addWebApplication(WebGroupImpl.java:88)
at com.ibm.ws.webcontainer.VirtualHostImpl.addWebApplication(VirtualHostImpl.java:169)
at com.ibm.ws.webcontainer.WSWebContainer.addWebApp(WSWebContainer.java:749)
at com.ibm.ws.webcontainer.WSWebContainer.addWebApplication(WSWebContainer.java:634)
at com.ibm.ws.webcontainer.component.WebContainerImpl.install(WebContainerImpl.java:426)
at com.ibm.ws.webcontainer.component.WebContainerImpl.start(WebContainerImpl.java:718)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.start(ApplicationMgrImpl.java:1177)
at com.ibm.ws.runtime.component.DeployedApplicationImpl.fireDeployedObjectStart(DeployedApplicationImpl.java:1370)
at com.ibm.ws.runtime.component.DeployedModuleImpl.start(DeployedModuleImpl.java:639)
at com.ibm.ws.runtime.component.DeployedApplicationImpl.start(DeployedApplicationImpl.java:968)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.startApplication(ApplicationMgrImpl.java:776)
at com.ibm.ws.runtime.component.ApplicationMgrImpl$5.run(ApplicationMgrImpl.java:2195)
at com.ibm.ws.security.auth.ContextManagerImpl.runAs(ContextManagerImpl.java:5474)
at com.ibm.ws.security.auth.ContextManagerImpl.runAsSystem(ContextManagerImpl.java:5600)
at com.ibm.ws.security.core.SecurityContext.runAsSystem(SecurityContext.java:255)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.start(ApplicationMgrImpl.java:2200)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.start(CompositionUnitMgrImpl.java:446)
at com.ibm.ws.runtime.component.CompositionUnitImpl.start(CompositionUnitImpl.java:123)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.start(CompositionUnitMgrImpl.java:389)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.access$500(CompositionUnitMgrImpl.java:117)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl$CUInitializer.run(CompositionUnitMgrImpl.java:995)
at com.ibm.wsspi.runtime.component.WsComponentImpl$_AsynchInitializer.run(WsComponentImpl.java:502)
at com.ibm.ws.util.ThreadPool$Worker.run(ThreadPool.java:1864)

[3/26/15 13:49:54:899 MDT] 00000066 Version Z org.hibernate.annotations.common.reflection.java.JavaReflectionManager <clinit> HCANN000001: Hibernate Commons Annotations {4.0.5.Final}
[3/26/15 13:49:55:511 MDT] 00000066 Enhance E CWWJP9992E: openjpa.Enhance: Error: The identity field defined in the com.company.model.KeyValueMapping Embeddable is not supported.
[3/26/15 13:49:55:837 MDT] 00000066 Dialect Z org.hibernate.dialect.Dialect <init> HHH000400: Using dialect: org.hibernate.dialect.SQLServer2008Dialect
[3/26/15 13:49:55:864 MDT] 00000066 LobCreatorBui Z org.hibernate.engine.jdbc.internal.LobCreatorBuilder useContextualLobCreation HHH000423: Disabling contextual LOB creation as JDBC driver reported JDBC version [3] less than 4
[3/26/15 13:49:56:071 MDT] 00000066 AnnotationCon W org.springframework.context.support.AbstractApplicationContext refresh Exception encountered during context initialization - cancelling refresh attempt
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in com.company.WebConfig: Invocation of init method failed; nested exception is java.lang.NoSuchMethodError: javax/persistence/Table.indexes()[Ljavax/persistence/Index;
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1568)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:956)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:747)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at com.ibm.ws.webcontainer.webapp.WebApp.notifyServletContextCreated(WebApp.java:1686)
at com.ibm.ws.webcontainer.webapp.WebAppImpl.initialize(WebAppImpl.java:414)
at com.ibm.ws.webcontainer.webapp.WebGroupImpl.addWebApplication(WebGroupImpl.java:88)
at com.ibm.ws.webcontainer.VirtualHostImpl.addWebApplication(VirtualHostImpl.java:169)
at com.ibm.ws.webcontainer.WSWebContainer.addWebApp(WSWebContainer.java:749)
at com.ibm.ws.webcontainer.WSWebContainer.addWebApplication(WSWebContainer.java:634)
at com.ibm.ws.webcontainer.component.WebContainerImpl.install(WebContainerImpl.java:426)
at com.ibm.ws.webcontainer.component.WebContainerImpl.start(WebContainerImpl.java:718)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.start(ApplicationMgrImpl.java:1177)
at com.ibm.ws.runtime.component.DeployedApplicationImpl.fireDeployedObjectStart(DeployedApplicationImpl.java:1370)
at com.ibm.ws.runtime.component.DeployedModuleImpl.start(DeployedModuleImpl.java:639)
at com.ibm.ws.runtime.component.DeployedApplicationImpl.start(DeployedApplicationImpl.java:968)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.startApplication(ApplicationMgrImpl.java:776)
at com.ibm.ws.runtime.component.ApplicationMgrImpl$5.run(ApplicationMgrImpl.java:2195)
at com.ibm.ws.security.auth.ContextManagerImpl.runAs(ContextManagerImpl.java:5474)
at com.ibm.ws.security.auth.ContextManagerImpl.runAsSystem(ContextManagerImpl.java:5600)
at com.ibm.ws.security.core.SecurityContext.runAsSystem(SecurityContext.java:255)
at com.ibm.ws.runtime.component.ApplicationMgrImpl.start(ApplicationMgrImpl.java:2200)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.start(CompositionUnitMgrImpl.java:446)
at com.ibm.ws.runtime.component.CompositionUnitImpl.start(CompositionUnitImpl.java:123)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.start(CompositionUnitMgrImpl.java:389)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl.access$500(CompositionUnitMgrImpl.java:117)
at com.ibm.ws.runtime.component.CompositionUnitMgrImpl$CUInitializer.run(CompositionUnitMgrImpl.java:995)
at com.ibm.wsspi.runtime.component.WsComponentImpl$_AsynchInitializer.run(WsComponentImpl.java:502)
at com.ibm.ws.util.ThreadPool$Worker.run(ThreadPool.java:1864)
Caused by: java.lang.NoSuchMethodError: javax/persistence/Table.indexes()[Ljavax/persistence/Index;
at org.hibernate.cfg.annotations.EntityBinder.processComplementaryTableDefinitions(EntityBinder.java:973)
at org.hibernate.cfg.AnnotationBinder.bindClass(AnnotationBinder.java:824)
at org.hibernate.cfg.Configuration$MetadataSourceQueue.processAnnotatedClassesQueue(Configuration.java:3845)
at org.hibernate.cfg.Configuration$MetadataSourceQueue.processMetadata(Configuration.java:3799)
at org.hibernate.cfg.Configuration.secondPassCompile(Configuration.java:1412)
at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1846)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:852)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:845)
at org.hibernate.boot.registry.classloading.internal.ClassLoaderServiceImpl.withTccl(ClassLoaderServiceImpl.java:398)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:844)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:343)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:318)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1627)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1564)
... 37 more


Thank you!

Gas Gas
Answer

The javax/persistence/Table.indexes() is from JPA 2.1, WebSphere Application Server traditional 8.5.5.2 is using by default JPA 2.0 (OpenJPA). If you want to use Hibernate you have to override the default provider - check this post for more details.

UPDATE

Yes, you are correct. You cannot override default provider in WebSphere traditional 8.5.5.x with JPA 2.1 as container relies on 2.0 api for initialization.

If you have to use 2.1 you may use it as application managed provider not container managed. So you would need to disable JPA for your application, check this and instead of rely on container on injecting EntityManager, initialize it by your self using API.

The other option would be to consider WebSphere Liberty which supports JPA 2.1 (using EclipseLink) starting from version 8.5.5.6. It should be possible to change provider there since container supports 2.1, however I didn't have time to test it.

You can also upgrade to WebSphere Application Server v9, recently released, which supports JPA 2.1.

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