fmonegaglia fmonegaglia - 1 year ago 245
Python Question

scipy odeint with complex initial values

I need to solve a complex-domain-defined ODE system, with complex initial values.
scipy.integrate.odeint does not work on complex systems.
I rod about cutting my system in real and imaginary part and solve separately, but my ODE system's rhs involves products between dependent variables themselves and their complex conjugates.
Haw do I do that? Here is my code, I tried breaking RHS in Re and Im parts, but I don't think the solution is the same as if I wouldn't break it because of the internal products between complex numbers.
In my script u1 is a (very)long complex function, say u1(Lm) = f_real(Lm) + 1j* f_imag(Lm).

from numpy import *
from scipy import integrate

def cj(z): return z.conjugate()

def dydt(y, t=0):
# Notation
# Dependent Variables
theta1 = y[0]
theta3 = y[1]
Lm = y[2]
u11 = u1(Lm)
u13 = u1(3*Lm)
zeta1 = -2*E*u11*theta1
zeta3 = -2*E*3*u13*theta3
# Coefficients
A0 = theta1*cj(zeta1) + 3*theta3*cj(zeta3)
A2 = -zeta1*theta1 + 3*cj(zeta1)*theta3 + zeta3*cj(theta1)
A4 = -theta1*zeta3 - 3*zeta1*theta3
A6 = -3*theta3*zeta3
A = - (A2/2 + A4/4 + A6/6)
# RHS vector components
dy1dt = Lm**2 * (theta1*(A - cj(A)) - cj(theta1)*A2/2
- 3/2*theta3*cj(A2)
- 3/4*cj(theta3)*A4
- zeta1)
dy2dt = Lm**2 * (3*theta3*(A - cj(A)) - theta1*A2/2
- cj(theta1)*A4/4
- 1/2*cj(theta3)*A6
- 3*zeta3)
dy3dt = Lm**3 * (A0 + cj(A0))
return array([dy1dt, dy2dt, dy3dt])

t = linspace(0, 10000, 100) # Integration time-step
ry0 = array([0.001, 0, 0.1]) # Re(initial condition)
iy0 = array([0.0, 0.0, 0.0]) # Im(initial condition)
y0 = ry0 + 1j*iy0 # Complex Initial Condition

def rdydt(y, t=0): # Re(RHS)
return dydt(y, t).real
def idydt(y, t=0): # Im(RHS)
return dydt(y, t).imag

ry, rinfodict = integrate.odeint(rdydt, y0, t, full_output=True)
iy, iinfodict = integrate.odeint(idydt, y0, t, full_output=True)

The error I get is this
TypeError: array cannot be safely cast to required type
odepack.error: Result from function call is not a proper array of


Answer Source

As you've discovered, odeint does not handle complex-valued differential equations, but there is scipy.integrate.complex_ode. complex_ode is a convenience function that takes care of converting the system of n complex equations into a system of 2*n real equations. (Note the discrepancy in the signatures of the functions used to define the equations for odeint and ode. odeint expects f(t, y, *args) while ode (and complex_ode) expect f(y, t, *args).)

A similar convenience function can be created for odeint. In the following code, odeintz is a function that handles the conversion of a complex system into a real system and solving it with odeint. The code includes an example of solving a complex system. It also shows how that system can be converted "by hand" to a real system and solved with odeint. But for a large system, that is a tedious and error prone process; using a complex solver is certainly a saner approach.

import numpy as np
from scipy.integrate import odeint

def odeintz(func, z0, t, **kwargs):
    """An odeint-like function for complex valued differential equations."""

    # Disallow Jacobian-related arguments.
    _unsupported_odeint_args = ['Dfun', 'col_deriv', 'ml', 'mu']
    bad_args = [arg for arg in kwargs if arg in _unsupported_odeint_args]
    if len(bad_args) > 0:
        raise ValueError("The odeint argument %r is not supported by "
                         "odeintz." % (bad_args[0],))

    # Make sure z0 is a numpy array of type np.complex128.
    z0 = np.array(z0, dtype=np.complex128, ndmin=1)

    def realfunc(x, t, *args):
        z = x.view(np.complex128)
        dzdt = func(z, t, *args)
        # func might return a python list, so convert its return
        # value to an array with type np.complex128, and then return
        # a np.float64 view of that array.
        return np.asarray(dzdt, dtype=np.complex128).view(np.float64)

    result = odeint(realfunc, z0.view(np.float64), t, **kwargs)

    if kwargs.get('full_output', False):
        z = result[0].view(np.complex128)
        infodict = result[1]
        return z, infodict
        z = result.view(np.complex128)
        return z

if __name__ == "__main__":
    # Generate a solution to:
    #     dz1/dt = -z1 * (K - z2)
    #     dz2/dt = L - z2
    # K and L are fixed parameters.  z1(t) and z2(t) are complex-
    # valued functions of t.

    # Define the right-hand-side of the differential equation.
    def zfunc(z, t, K, L):
        z1, z2 = z
        return [-z1 * (K - z2), L - z2] 

    # Set up the inputs and call odeintz to solve the system.
    z0 = np.array([1+2j, 3+4j])
    t = np.linspace(0, 4, 101)
    K = 3
    L = 1
    z, infodict = odeintz(zfunc, z0, t, args=(K,L), full_output=True)

    # For comparison, here is how the complex system can be converted
    # to a real system.  The real and imaginary parts are used to
    # write a system of four coupled equations.  The formulas for
    # the complex right-hand-sides are
    #   -z1 * (K - z2) = -(x1 + i*y1) * (K - (x2 + i*y2))
    #                  = (-x1 - i*y1) * (K - x2 + i(-y2))
    #                  = -x1 * (K - x2) - y1*y2 + i*(-y1*(K - x2) + x1*y2)
    # and
    #   L - z2 = L - (x2 + i*y2)
    #          = (L - x2) + i*(-y2)
    def func(r, t, K, L):
        x1, y1, x2, y2 = r
        dx1dt = -x1 * (K - x2) - y1*y2
        dy1dt = -y1 * (K - x2) + x1*y2
        dx2dt = L - x2
        dy2dt = -y2
        return [dx1dt, dy1dt, dx2dt, dy2dt]

    # Use regular odeint to solve the real system.
    r, infodict = odeint(func, z0.view(np.float64), t, args=(K,L), full_output=True)

    # Compare the two solutions.  They should be the same.  (As usual for
    # floating point calculations, there could be a small difference.)
    delta_max = np.abs(z.view(np.float64) - r).max()
    print "Maximum difference between the complex and real versions is", delta_max

    # Plot the real and imaginary parts of the complex solution.

    import matplotlib.pyplot as plt

    plt.plot(t, z[:,0].real, label='z1.real')
    plt.plot(t, z[:,0].imag, label='z1.imag')
    plt.plot(t, z[:,1].real, label='z2.real')
    plt.plot(t, z[:,1].imag, label='z2.imag')

Here's the plot generated by the script:

Solution to the complex system


This code has been significantly expanded into a function called odeintw that handles complex variables and matrix equations. The new function can be found on github:

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